PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226700.1
Common NameB456_005G226700, LOC105795126
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 396aa    MW: 44436.4 Da    PI: 9.5708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058358377120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C +C+ ++ r+++L++H+
  Gorai.005G226700.1 358 FRCAICNITCGRSEDLNSHL 377
                         89*****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031342.9E-2227103IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576678.25E-11207251No hitNo description
SMARTSM004512.1E-4218252IPR003604Zinc finger, U1-type
PfamPF128746.2E-10221245No hitNo description
SMARTSM003550.44221245IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.73E-7347387No hitNo description
SMARTSM004510.004355389IPR003604Zinc finger, U1-type
PfamPF128742.4E-4358382No hitNo description
SMARTSM0035510358382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGFQALVNLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE  60
HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNHFV HPCLYMDLPT IINWFKKQQD  120
LFLKDNFLVE VADDFVKAHG PTEVQEKLIA NEPKGTETSI LQKGIKPVQI AEKSEVAPIL  180
KTDPNVIQTV NNTTVTLSET VGEVGPDLPK ISSDKQVQKE WTCAMCQVTT TSEKTLKSHL  240
QGRKHKNKLM QANNQPCKGK AGLASKVKQS EVSRKEPQKK GSKNYEPPKG QMSASSAACS  300
NAVNPKTEMS KSNLPKEEWK KVIPTTNMVG NHVKSSENVQ GQQQQVEKEH NKTKIPQFRC  360
AICNITCGRS EDLNSHLWGR KHLAKLNSLG RGQLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480067.10.0PREDICTED: uncharacterized protein LOC105795126 isoform X1
TrEMBLA0A0D2NH590.0A0A0D2NH59_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2060334
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]